PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538746.1_FGP031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 399aa    MW: 43790.6 Da    PI: 6.8628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538746.1_FGP031genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000572863191654
                        HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        i +++  L++++ +      +K + a++L ++++YIk L
  KN538746.1_FGP031 286 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 319
                        667889999999987.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.947270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-9285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-8285339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-4285324No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MRLPAAGEHA HGHGWSHGEL SNSTTGGCYR ENFLDLLASK NVTPEMFEEV PAAEHYNVAP  60
AGTTLTTARS SFDHARSDVS PIKYEIAGSP LYLGGTNTVL QVQDMTMMSS TPACYGKHHH  120
HHHQLTKEGS CSHQQQEQHE LAISPMASFL QQISSGSASV GVHNSSLDYS GLGDQPDKIC  180
CQDGREMEAS PFSMRSLPDL GSFAGYTPAI ESTSVQPYMR CANSSDSNRQ EQETVQARSS  240
SSGSGAAATD RKKRKLEERQ ESTVKKSKQE ASKASPPKQP VPKVKIGEKI TALQQIVSPF  300
GKTDTASVLF ETIKYIKFLH EQVQLLSEPY TNSSRSNKQF QGNSVPWGDQ AEASKGETTE  360
HDLRNRGLCL VPVSWTPEVY RDGNAMDYWT PAYRGCLYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070630.0AK107063.1 Oryza sativa Japonica Group cDNA clone:002-121-E03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623677.10.0PREDICTED: transcription factor bHLH110
TrEMBLA0A0E0CPN00.0A0A0E0CPN0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA005863-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os02g45010.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12698910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.12e-43bHLH family protein